Meeting Information
Monday, July 14th 2008
| Location: Computer Science Building - Banana Gallery - Ground Floor Lobby | 7:00 | Registration |
| Location: Computer Science Room 105 | |
| 8:00 | Welcome and Opening Address: Dr Alex Wilson, University of Miami |
| 8:30 | Keynote Address: "What is genome annotation?" Dr Jay Evans, Agricultural Research Service, USDA |
| 9:20 | Talk: "Sequencing and automated annotation of the pea aphid" Dr Stephen Richards, Baylor College of Medicine |
| 10:10 | Coffee Break - Banana Gallery |
| 10:30 | Presentation: AphidBase Dr Fabrice Legeai & Jean-Pierre Gauthier, INRA France |
| 11:00 | Training Session: GBrowse Jean-Pierre Gauthier, INRA, France |
| 11:30 | Training Session: Apollo Fabrice Legeai, INRA, France |
| 13:00 | Lunch - Banana Gallery Meeting of IAGC Steering Committee re: AphidBase Location: Computer Science Room 102 |
| 14:00 | Training Session: International Aphid Genomics Consortium Collbaoration Wiki Shuji Shigenobu, Princeton University |
| 14:30 | Coffee Break - Banana Gallery |
| 15:00 | Apollo Training Session 1 - Location: Friend Room 017 |
| 15:00 | Metabolism and Transport Location: Friend Room 110 |
| 15:00 | OBPs & OGRs Location: Friend Room 112 |
| 15:30 | Apollo Training Session 2 - Location: Friend Room 017 |
| 16:00 | Apollo Training Session 3 - Location: Friend Room 017 |
| 16:00 | Stress & Immunity Location: Friend Room 110 |
| 16:00 | Proteases & Carbohydrases Location: Friend Room 112 |
| 16:30 | Apollo Training Session 4 - Location: Friend Room 017 |
| Location: Computer Science Room 105 | |
| 17:00 | Mini-Conference |
| 17:10 | "Improving functional annotation through phylogeny-based orthology detection at a genomic scale" Toni Gabaldon |
| 17:25 | "The pea aphid mitochondrial genome and mt pseudogenes in the nuclear genome" Nancy Moran |
| 17:40 | "Ordering the pea aphid scaffolds by HAPPY mapping" Justin Pachebat |
| 17:55 | "Partial duplication of the microRNAs machinery in the pea aphid genome" Stéphanie Jaubert |
| 18:10 | "Genome-wide identification of facilitative sugar transporters in the pea aphid" Daniel Price |
| Location: Robertson-Hall-Woodrow Wilson School Dining Hall | |
| 19:00 | Banquet |
| Location: Computer Science - Banana Gallery | |
| 20:30 | Poster Session |
Tuesday, July 15th 2008
| Location: Computer Science 105 | |
| 8:00 | Announcements and Overview Alex Wilson, University of Miami |
| 8:10 | Keynote Address: "Annotation and Education" Dr John Colbourne, Indiana University |
| Coffee Available in the Banana Gallery from 10:00 - 11:00 | |
| 9:00 | Apollo Training Session 5 - Location: Friend Room 017 |
| 9:00 | Bact. Genes in Ap genome Location: Friend Room 110 |
| 9:00 | Sex Determination Location: Friend Room 112 |
| 9:30 | Apollo Training Session 6 - Location: Friend Room 017 |
| 10:00 | Apollo Training Session 7 - Location: Friend Room 017 |
| 10:00 | TEs Location: Friend Room 110 |
| 10:00 | Development Location: Friend Room 112 |
| 10:30 | Apollo Training Session 8 - Location: Friend Room 017 |
| 11:00 | Apollo Training Session 9 - Location: Friend Room 017 |
| 11:00 | Virus Transmission Location: Friend Room 110 |
| 11:00 | Pesticide Resistance Location: Friend Room 112 |
| 11:30 | Apollo Training Session 10 - Location: Friend Room 017 |
| 12:00 | Lunch - Banana Gallery |
| 13:00 | Germ Line Determination Location: Friend Room 110 |
| 13:00 | Circadian Rhythms Location: Friend Room 112 |
| 14:00 | Meiosis & Mitosis Location: Friend Room 110 |
| 14:00 | JH Related Location: Friend Room 112 |
| 15:00 | Coffee Break - Banana Gallery |
| Location: Computer Science 105 | |
| 15:30 | Discussion: "Publication Models and Plans" Dr Nancy Moran, University of Arizona |
| 16:00 | Discussion: "Setting Priorities for Functional Annotation" Dr Denis Tagu, INRA France |
| Location: Friend Rooms 016, 017, 110 and 112 and Banana Gallery are available | |
| 16:30 | Annotation Session IV - Self-Organized Final Session - Opportunity to Discuss Future Plans and Wrap-up |
| Location: Computer Science Room 105 | |
| 17:30 | Concluding Remarks David Stern, Princeton University |
| 18:00 | Workshop Concludes |
Important notes on the Program for
Monday July 14th and Tuesday July 15th 2008
Apollo Training Sessions: Fabrice Legeai will be running 30 min Apollo training sessions for groups of 5-6 people in Friend Room 017. Please sign-up for one of these 10 training sessions. The sign-up sheet will be available at the registration desk.
General Notes on the scheduling of Annotation Group Meetings: For annotation groups that have > 3 members attending the workshop, we have endeavored to schedule exclusive 1 hour sessions for those groups to meet. With a few exceptions, these meeting times should allow you to participate in meeting with all your annotation groups. However, there are some cases where workshop attendees from the same institution, who are members of a large number of groups will have to negotiate with each other to ensure that a representative of their institution is present at the group meeting. We trust that groups with < 4 members present at the workshop can schedule amongst themselves
Meeting Places for Self-Scheduled Annotation Sessions: During the workshop, we will have the rooms available to us for group meetings. Please share rooms with other groups. Many of the annotation groups are quite small. The rooms are: Friend 016 (has hard-wired Mac computers with Apollo installed), when not in use for the Apollo training sessions, Friend 017 (has hard-wired Windows computers with Apollo installed), Friend 110 and 112, Computer Science 102, the Banana Gallery and also the large room Computer Science Room 105.
Posters: You are welcome and encouraged to put your posters up as soon as you arrive. Posters will be hung in the Banana Gallery and can stay up for the whole workshop. Please look in the program to identify the number of your poster and hang it on the appropriate poster board.
